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Abdur Sikder
Dr. Abdur SikderMarquette University

Cudahy Hall, 369

MilwaukeeWI53201United States of America

Visiting Assistant Professor

Department of Computer Science

Courses Taught

  • COSC 1010 – Introduction to Software Development
  • COSC 3090 – Bioinformatics Algorithms

Research Interests

  • Bioinformatics Algorithms, Computational Biology, Protein Sequence, Structure, and Domain prediction, Protein Phosphorylation, Functional genomics.
  • Personalized medicine, Medical informatics.
  • Cyber security, Malware detection, IOT security.
  • Machine Learning: Support Vector Machine, Neural Network, CNN, Deep Learning


  • Amin, R., Karim, M.M. and Sikder, A.R., “Prediction of the post-translational modification sites on dengue virus E protein and deciphering their role in pathogenesis”, 2010 International Journal of Bioinformatics Research and Applications. Vol.6, No.5, pp 508-521
  • Biswas A.K., Noman N. and Sikder, A.R., Machine Learning approach to predict protein phosphorylation sites by incorporating evolutionary information”, BMC Bioinformatics 2010, 11:273
  • Sikder A.R. and Zomaya A.Y., "Analysis on Protein Phosphorylation Site Predictors with an Independent Dataset", International Journal of Bioinformatics Research and Applications.Vol.5, No.1, 2009 pp.20-37
  • Yoo P. D., Sikder A.R., Zhou B. B. and Zomaya A.Y. "Improved IGRN for protein domain boundary Prediction", BMC Bioinformatics 2008, 9(Suppl 1): S12
  • Yoo P. D., Sikder A.R., Taheri J., Zhou B. B. and Zomaya A.Y. " DomNet: Domain Boundary Prediction Using Enhanced General Regression Networks and New Profiles", IEEE Transactions on NanoBioscience, Vol 7, no.2, 2008.
  • Sikder A.R. and Zomaya A.Y. "Inferring the Protein Domain Boundary of Discontinuous Domain", IEEE Transactions on NanoBioscience,Vol 7, no. 3, 2008.
  • Sikder A.R., "Bioinformatics in Bangladesh: An Optimistics View" Plant Tissue Cult. & Biotech. 18(1): 85-88, 2008 (June).
  • Sikder A.R. and Zomaya A.Y. "Improving the performance of DomainDiscovery of protein domain boundary assignment using inter-domain linker index", BMC Bioinformatics 2006, 7(Suppl 5):S6.
  • Sikder A.R. and Zomaya A.Y. "An Overview of Protein Folding Techniques: Issues and Perspectives", International Journal of Bioinformatics Research and Applications.Vol.1, No.1, 2005 pp.121-143

Faculty & Staff Directory


Department of Computer Science
Katharine R. Cudahy Hall, Room 201
1313 W. Wisconsin Avenue
Milwaukee WI 53233
(414) 288-8600

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